Getting Started

Getting from an empty environment to a first plotted trajectory takes three steps. Install the two packages, run one scenario from a measured prevalence to a curve, and translate the R idioms a malaria modeller already knows into their pandas equivalents. The last of those has its own translation table. Please see Installation for the install command and where the model weights live. To run the whole pipeline in the browser without installing anything, open the Colab notebook.

• Installation — pip install "estimint[scenarios]", the extras, and the weights.
• Quickstart — one scenario, from a prevalence to a trajectory.
• Coming from R — the pandas translation table, and dataclasses.
• Colab notebook — the whole pipeline in the browser, no install.