MINTverse
  1. Home
  • Home
  • Overview
  • Orientation
  • Python for Malaria Modellers
    • What is Python?
    • Python tools
    • Installing Python
    • Working in VS Code
    • Environments and packages
    • Notebooks
  • Getting Started
    • Installation
    • Quickstart
    • Coming from R
    • Colab notebook
  • Core Concepts
    • The MINTverse pipeline
    • EIR, HBR, prevalence, and cases
    • Interventions and nets
    • The models
    • Accuracy and speed
  • estiMINT: EIR and HBR
    • Nets and dn0
    • Estimating EIR from prevalence
    • EIR and HBR
    • Mosquito density and EIR
    • estiMINT API
  • stateMINT: the Emulator
    • Covariates and the time grid
    • Calling the emulator
    • Plotting trajectories
    • Performance and caching
    • stateMINT API
  • Scenarios
    • Running scenarios
    • A list of scenarios
    • Trajectories and cases
    • Exporting results
  • Troubleshooting

Malaria intervention modelling

MINTverse

Documentation and guidance for using the malariasimulation machine learning emulator for prevalence and incidence analysis.

Get started MINTweb New to Python? GitHub

estiMINT

Estimates the entomological inoculation rate (EIR) and the human biting rate (HBR) from a measured prevalence and the setting it was measured in. Both are single equilibrium values, not trajectories.

stateMINT

Emulates the individual-based model, returning under-5 prevalence and clinical cases over the three years before a campaign and the three years after, in milliseconds per scenario.

New to Python?

Readers coming from R, and meeting Python for the first time, should start with Python for Malaria Modellers, which covers the interpreter, the environment, and the notebook from scratch.

Install

pip install "estimint[scenarios]"

Contents

  • Overview
  • Orientation
  • Python for Malaria Modellers
  • Getting Started
  • Core Concepts
  • estiMINT: EIR and HBR
  • stateMINT: the Emulator
  • Running Scenarios
  • Troubleshooting

Cite MINTverse

@software{santoni2026mintverse,
  author = {Santoni, Cosmo and Thapar, Anmol},
  title  = {MINTverse: estiMINT and stateMINT for malaria intervention modelling},
  year   = {2026},
  url    = {https://github.com/CosmoNaught/MINTverse}
}
Overview
 

© 2026 Cosmo Santoni and Anmol Thapar · part of the MINTverse.